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Inventi Impact: Bioinformatics

Articles

  • Inventi:ebi/31/12
    GENSENSOR SUITE: AWEB-BASED TOOL FOR THE ANALYSIS OF GENE AND PROTEIN INTERACTIONS, PATHWAYS, AND REGULATION
    30-Sep-2012 Research 2012 : October - December
    Mark Gosink, Sawsan Khuri, Camilo Valdes, Zhijie Jiang, Nicholas F Tsinoremas

    The GenSensor Suite consists of four web tools for elucidating relationships among genes and proteins. GenPath results show which\r\nbiochemical, regulatory, or other gene set categories are over- or under-represented in an input list compared to a background list.\r\nAll common gene sets are available for searching in GenPath, plus some specialized sets. Users can add custom background lists.\r\nGenInteract builds an interaction gene list from a single gene input and then analyzes this in GenPath. GenPubMed uses a PubMed\r\nquery to identify a list of PubMed IDs, from which a gene list is extracted and queried in GenPath. GenViewer allows the user to\r\nquery one gene set against another in GenPath. GenPath results are presented with relevant P- and q-values in an uncluttered, fully\r\nlinked, and integrated table. Users can easily copy this table and paste it directly into a spreadsheet or document.

    How to Cite this Article
    CC Compliant Citation: Mark Gosink, Sawsan Khuri, Camilo\r\nValdes, Zhijie Jiang, and Nicholas F. Tsinoremas, â??GenSensor\r\nSuite: A Web-Based Tool for the Analysis of Gene and Protein\r\nInteractions, Pathways, and Regulation,â? Advances in\r\nBioinformatics, vol. 2011, Article ID 271563, 7 pages, 2011.\r\ndoi:10.1155/2011/271563.
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